Precursor miRNA: mmu-mir-467c

Precursor miRNA

Precursor Name mmu-mir-467c
Genomic Location chr2:10473931-10474027 (+); nearby genomic features
Clustered miRNAs mmu-mir-466m,mmu-mir-466f-1,mmu-mir-669f,mmu-mir-669e,mmu-mir-669b,mmu-mir-669d,mmu-mir-466f-2,mmu-mir-669l,mmu-mir-669d-2,mmu-mir-466f-3,mmu-mir-297a-2,mmu-mir-466o,mmu-mir-467c,mmu-mir-466b-1,mmu-mir-669a-3,mmu-mir-669k,mmu-mir-467a-1,mmu-mir-466b-8,mmu-mir-669a-1,mmu-mir-669g,mmu-mir-669j,mmu-mir-467a-2,mmu-mir-466e,mmu-mir-669a-4,mmu-mir-467b,mmu-mir-466c-1,mmu-mir-669a-5,mmu-mir-467a-3 (within 10kb in genome)
NCBI GENE ID 100124487
miRBase ID MI0005512
Precursor Sequence 
-  -   g     ----aa       ca      --         auuuua
 cc uuu ugcau      gugcgug  uguaua  uguguguau      u
 || ||| |||||      |||||||  ||||||  |||||||||       g
 gg aag gcgua      cacguac  acauau  acacacaua      c
c  u   a     cagaca       ac      cc         cauaua

Mature miRNA

Mature Name mmu-miR-467c-5p
Previous Name mmu-miR-467c
Mature Sequence 5' - uaagugcgugcauguauaugug - 3' (length = 22)
Predicted Targets miRDB
Validated Targets TarBase
miRBase ID MIMAT0004885
Similar miRNAs mmu-miR-467d-5p (sharing the same seed sequence with mmu-miR-467c-5p).

References

  • Identification of an imprinted gene cluster in the X-inactivation center. Kobayashi S, Totoki Y, Soma M, Matsumoto K, Fujihara Y, Toyoda A, Sakaki Y, Okabe M, Ishino F. PLoS One. 2013 Aug 6;8(8):e71222.

  • Isolation of fetal gonads from embryos of timed-pregnant mice for morphological and molecular studies. Li Y, Taketo T, Lau YF. Methods Mol Biol. 2012;825:3-16.

  • A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen A, Canidio E, Pagani M, Peluso I, Lin-Marq N, Koch M, Bilio M, Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E, Mehmeti S, Dagand E, Schrinner S, Nürnberger A, Schmidt K, Metz K, Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe F, Sieverding C, Fischer B, Schrader K, Brockmeyer M, Dettmer S, Helbig C, Alunni V, Battaini MA, Mura C, Henrichsen CN, Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S, Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P, Reymond A, Davidson DR, Dollé P, Antonarakis SE, Yaspo ML, Martinez S, Baldock RA, Eichele G, Ballabio A. PLoS Biol. 2011 Jan 18;9(1):e1000582.

  • miRBase: integrating microRNA annotation and deep-sequencing data. Kozomara A, Griffiths-Jones S. Nucleic Acids Res. 2011 Jan;39(Database issue):D152-7.

  • Mammalian microRNAs: experimental evaluation of novel and previously annotated genes. Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP. Genes Dev. 2010 May 15;24(10):992-1009.

  • MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing. Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A. Mol Hum Reprod. 2010 Jul;16(7):463-71.

  • A mammalian microRNA expression atlas based on small RNA library sequencing. Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foà R, Schliwka J, Fuchs U, Novosel A, Müller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G, Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN, Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo JJ, Sander C, Zavolan M, Tuschl T. Cell. 2007 Jun 29;129(7):1401-14.

  • miRBase: microRNA sequences, targets and gene nomenclature. Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4.